Article

Ornaments for Accurate and Efficient Allele-Specific Expression Estimation with Bias Correction

2023-10-29

Abstract excerpt

Allele-specific expression has been used to elucidate various biological mechanisms, such as genomic imprinting and gene expression variation caused by genetic changes in cis -regulatory elements. However, existing methods for obtaining allele-specific expression from RNA-seq reads do not adequately and efficiently remove various biases, such as reference bias, where reads containing the alternative allele do not...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 28b6c575-c4cc-5ba4-b230-752d163da364
DOI: 10.1101/2023.10.25.564046

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Ornaments for Accurate and Efficient Allele-Specific Expression Estimation with Bias CorrectionDOI 10.1101/2023.10.25.564046Read

Ornaments for efficient allele-specific expression estimation with bias correction.Semantic proximity Read

A compendium of methods: Searching allele specific expression via RNA sequencing.Semantic proximity Read

ASEQ: fast allele-specific studies from next-generation sequencing data.Semantic proximity Read

A new strategy to reduce allelic bias in RNA-Seq readmapping.Semantic proximity Read

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals.Semantic proximity Read

AlleleSeq: analysis of allele-specific expression and binding in a network framework.Semantic proximity Read

Highly accurate quantification of allelic gene expression for population and disease genetics.Semantic proximity Read

aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals.Semantic proximity Read

Computational methods for allele-specific expression in single cells.Semantic proximity Read

ASElux: an ultra-fast and accurate allelic reads counter.Semantic proximity Read

Genome-wide identification of allele-specific effects on gene expression for single and multiple individuals.Semantic proximity Read

QuASAR: quantitative allele-specific analysis of reads.Semantic proximity Read