Article

Reference-free and <i>de novo</i> Identification of Circular RNAs

2020-04-23

Abstract excerpt

<h4>Background</h4> Early studies have unveiled multiple regulatory functions of circular RNAs (circRNAs); however, accurate detection and quantification of circRNAs, especially in understudied organisms, is unsolved yet. <h4>Results</h4> In this study, we developed a new reference-free method, namely Cirit, to de novo detect circRNAs with sequence support from the next generation sequencing (NGS) transcriptome...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 179e0471-6502-5316-a24f-76552c20baca
DOI: 10.1101/2020.04.21.050617

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Reference-free and <i>de novo</i> Identification of Circular RNAsDOI 10.1101/2020.04.21.050617Read

Noncanonical Circular RNAs and Potential FunctionsSemantic proximity Read

circRNAprofiler: an R-based computational framework for the downstream analysis of circular RNAs.Semantic proximity Read

DEBKS: A Tool to Detect Differentially Expressed Circular RNASemantic proximity Read

Recent advances in understanding circular RNAsSemantic proximity Read

circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencingSemantic proximity Read

Sensitive, reliable, and robust circRNA detection from RNA-seq with CirComPara2Semantic proximity Read

CircRNA-Pro: A Novel Toolkit for High-Precision Detection of Differentially Expressed Circular RNAs and Translatable Circular RNAsSemantic proximity Read

Common Pitfalls in CircRNA Detection and QuantificationSemantic proximity Read

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precisionSemantic proximity Read

Accurate Assembly of Circular RNAs with TERRACESemantic proximity Read

Detecting Circular RNA from High-throughput Sequence Data with de Bruijn GraphSemantic proximity Read

Ouro-seq: Improved Recovery of Full-Length circRNAs from Samples with Limited RNA ContentSemantic proximity Read