Article

MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman

2016-04-27

Abstract excerpt

Modern next generation sequencing technologies produce vast amounts of data in the context of large-scale metagenomic studies, in which complex microbial communities can be reconstructed to an unprecedented level of detail. Most prominent examples are human microbiome studies that correlate the bacterial taxonomic profile with specific physiological conditions or diseases. In order to perform these analyses high-t...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 0b07ea6d-946c-5ce5-99a8-b480e65d064d
DOI: 10.1101/050559

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean IcemanDOI 10.1101/050559Read

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on <i>Streptococcus mutans</i> and <i>Streptococcus sobrinus</i>Semantic proximity Read

New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing.Semantic proximity Read

Unravelling the ancient fungal DNA from the Iceman’s gutSemantic proximity Read

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun meta-genomic dataSemantic proximity Read

metaJAM: a Nextflow integrated metagenomic workflow for sedimentary ancient DNASemantic proximity Read

OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structuresSemantic proximity Read

Carnelian: alignment-free functional binning and abundance estimation of metagenomic readsSemantic proximity Read

HOPS: Automated detection and authentication of pathogen DNA in archaeological remainsSemantic proximity Read

decOM: Similarity-based microbial source tracking of ancient oral samples using k-mer-based methodsSemantic proximity Read

MetaPhage: an automated pipeline for analyzing, annotating, and classifying bacteriophages in metagenomics sequencing dataSemantic proximity Read

MEGAN analysis of metagenomic data.Semantic proximity Read

Autometa: Automated extraction of microbial genomes from individual shotgun metagenomesSemantic proximity Read