Article

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus

2019-11-15

Abstract excerpt

We have recently developed bioinformatic tools to accurately assign metagenomic sequence reads to microbial taxa: SPARSE [1] for probabilistic, taxonomic classification of sequence reads, EToKi [2] for assembling and polishing genomes from short read sequences, and GrapeTree [3], a graphic visualizer of genetic distances between large numbers of genomes. Together, these methods support comparative analyses of geno...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: c0c94108-1f2e-5f94-9c6f-46ee6d8a103a
DOI: 10.1101/842542

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinusDOI 10.1101/842542Read

Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxaSemantic proximity Read

Evolutionary landscape of oral microbiome over 100,000 yearsSemantic proximity Read

The Human Oral MicrobiomeSemantic proximity Read

Ancient Genomes From Bronze Age Remains Reveal Deep Diversity and Recent Adaptive Episodes for Human Oral PathobiontsSemantic proximity Read

A high-quality genomic catalog of the human oral microbiome broadens its phylogeny and clinical insightsSemantic proximity Read

Ancient species diversity and niche adaptation in Tannerella and Porphyromonas revealed through pangenomicsSemantic proximity Read

Exploring the Evolution of the Cariogenic Oral Pathobiont Streptococcus mutans Using Ancient DNASemantic proximity Read

Saliva microbiomes distinguish caries-active from healthy human populationsSemantic proximity Read

An extensive archaeological dental calculus dataset spanning 5000 years for ancient human oral microbiome researchSemantic proximity Read

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencingSemantic proximity Read

Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host moleculesSemantic proximity Read

CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral MicrobiomeSemantic proximity Read

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on <i>Streptococcus mutans</i> and <i>Streptococcus sobrinus</i>

Abstract excerpt

Topics

Identifiers and source

Related research