Article

EcOH: <i>In silico</i> serotyping of <i>E. coli</i> from short read data

2015-11-18

Abstract excerpt

The lipopolysaccharide (O) and flagellar (H) surface antigens of Escherichia coli are targets for serotyping that have traditionally been used to identify pathogenic lineages of E. coli . As serotyping has several limitations, public health reference laboratories are increasingly moving towards whole genome sequencing (WGS) for the rapid characterisation of bacterial isolates. Here we present a method to rapidly...

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Literature Corpus work: 0007044a-8b42-5948-a2e2-9787729a8530
DOI: 10.1101/032151

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