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Article

tidyGenR: tidy multilocus amplicon genotypes in R.

PeerJ - 1 Jan 2026

Camacho-Sanchez Miguel, Leonard Jennifer A

Abstract excerpt

Multiplexed amplicon sequencing has become an important tool in phylogenetics and conservation genetics. Amplicon sequencing reads need to be processed to get final haplotypes. The bioinformatics involved is often limiting for embarking on these kind of projects and there are few tools designed to handle this type of data. tidyGenR is an R package for reproducible multilocus amplicon genotyping workflows from...

Read the complete abstract on PubMed

Topics

Animals
Software
Genotype
Haplotypes
High-Throughput Nucleotide Sequencing
Computational Biology
Sequence Analysis, DNA

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Genetics, Population

Multilocus Sequence Typing

Rodentia

Source

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Identifiers

PMID: 42765074
DOI: 10.7717/peerj.21726
PMCID: PMC13589960

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