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Article

A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species.

Genome biology - 7 Feb 2026

Saidi Somia, Blaison Mathieu, Del Pilar Rodríguez-Ordóñez María, Confais Johann, Quesneville Hadi

Abstract excerpt

BACKGROUND: The role of transposable elements (TEs) in host adaptation has gained interest in recent years. Individuals of the same species undergo independent TE insertions, providing genetic variability within populations, upon which natural selection can act to foster adaptation to environmental conditions. RESULTS: As de novo assembled genomes are becoming increasingly affordable, helping to overcome the bias...

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PMID: 41654859
DOI: 10.1186/s13059-026-03984-5
PMCID: PMC13059284

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