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Article

Differences in activity and stability drive transposable element variation in tropical and temperate maize.

Genome research - 20 Sept 2024

Ou Shujun, Scheben Armin, Collins Tyler, Qiu Yinjie, Seetharam Arun S, Menard Claire C, Manchanda Nancy, Gent Jonathan I, Schatz Michael C, Anderson Sarah N, Hufford Matthew B, Hirsch Candice N

Abstract excerpt

Much of the profound interspecific variation in genome content has been attributed to transposable elements (TEs). To explore the extent of TE variation within species, we developed an optimized open-source algorithm, panEDTA, to de novo annotate TEs in a pangenome context. We then generated a unified TE annotation for a maize pangenome derived from 26 reference-quality genomes, which reveals an excess of 35.1 Mb...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Source

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Identifiers

PMID: 39251347
DOI: 10.1101/gr.278131.123
PMCID: PMC11444183

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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