Low-call-rate SNPs and presence-absence variation identified in the rice pan-genome can improve genomic prediction of rice gene bank accessions.

Abstract excerpt

KEY MESSAGE: Substantial improvements in genomic prediction accuracy for rice gene bank accessions were achieved by incorporating SNPs of low call rate identified in a recently published rice pan-genome. Introduction of useful genetic variation to breeding populations is a key factor in achieving genetic gain in crop breeding. However, identifying donors from genetic diversity stored in gene banks requires...

Topics

• Oryza
• Polymorphism, Single Nucleotide
• Genome, Plant
• Phenotype
• Genomics
• Genotype