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Article

An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments.

Genome research - 1 Sept 2004

Feltus F Alex, Wan Jun, Schulze Stefan R, Estill James C, Jiang Ning, Paterson Andrew H

Abstract excerpt

Dense coverage of the rice genome with polymorphic DNA markers is an invaluable tool for DNA marker-assisted breeding, positional cloning, and a wide range of evolutionary studies. We have aligned drafts of two rice subspecies, indica and japonica, and analyzed levels and patterns of genetic diversity. After filtering multiple copy and low quality sequence, 408,898 candidate DNA polymorphisms (SNPs/INDELs) were...

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Identifiers

PMID: 15342564
DOI: 10.1101/gr.2479404
PMCID: PMC515328

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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