Genotype calling and haplotype inference from low coverage sequence data in heterozygous plant genome using HetMap.

Abstract excerpt

KEY MESSAGE: This study developed a new genotyping method that can accurately infer heterozygous genotype information from the complex plant genome sequence data, which helped discover new alleles in the association studies. Many software packages and pipelines had been developed to handle the sequence data of the model species. However, Genotyping from complex heterozygous plant genome needs further improvement...

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