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Article

NanoFilter: enhancing phasing performance by utilizing highly consistent INDELs and SNVs in nanopore sequencing.

Bioinformatics (Oxford, England) - 1 Sept 2025

Chen Shanming, Nie Fan, Wang Jianxin

Abstract excerpt

MOTIVATION: Nanopore sequencing data offer longer reads compared to other technologies, which is beneficial for phasing and genome assembly. INDELs provide valuable haplotype information and have significant potential to improve phasing performance. However, accurately identifying INDELs with variant callers is challenging, and incorporating INDELs into phasing remains a complex task. To address these issues, we...

Read the complete abstract on PubMed

Topics

Nanopore Sequencing
INDEL Mutation
Software
Polymorphism, Single Nucleotide
Humans
Sequence Analysis, DNA

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Identifiers

PMID: 40802540
DOI: 10.1093/bioinformatics/btaf453
PMCID: PMC12448842

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