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High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar.

Plant physiology - 30 Apr 2024

Shi Tian-Le, Jia Kai-Hua, Bao Yu-Tao, Nie Shuai, Tian Xue-Chan, Yan Xue-Mei, Chen Zhao-Yang, Li Zhi-Chao, Zhao Shi-Wei, Ma Hai-Yao, Zhao Ye, Li Xiang, Zhang Ren-Gang, Guo Jing, Zhao Wei, El-Kassaby Yousry Aly, Müller Niels, Van de Peer Yves, Wang Xiao-Ru, Street Nathaniel Robert, Porth Ilga, An Xinmin, Mao Jian-Feng

Abstract excerpt

Poplar (Populus) is a well-established model system for tree genomics and molecular breeding, and hybrid poplar is widely used in forest plantations. However, distinguishing its diploid homologous chromosomes is difficult, complicating advanced functional studies on specific alleles. In this study, we applied a trio-binning design and PacBio high-fidelity long-read sequencing to obtain haplotype-phased...

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Alleles
Gene Expression Regulation, Plant
Genome, Plant
Haplotypes

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Hybridization, Genetic

Machine Learning

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PMID: 38412470
DOI: 10.1093/plphys/kiae078
PMCID: PMC11060683

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 31 Aug 2026.

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