Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.

doi:10.1038/s41467-021-24328-w

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Community

Back to search

Article

Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.

Nature communications - 5 Jul 2021

Lovell John T, Bentley Nolan B, Bhattarai Gaurab, Jenkins Jerry W, Sreedasyam Avinash, Alarcon Yanina, Bock Clive, Boston Lori Beth, Carlson Joseph, Cervantes Kimberly, Clermont Kristen, Duke Sara, Krom Nick, Kubenka Keith, Mamidi Sujan, Mattison Christopher P, Monteros Maria J, Pisani Cristina, Plott Christopher, Rajasekar Shanmugam, Rhein Hormat Shadgou, Rohla Charles, Song Mingzhou, Hilaire Rolston St, Shu Shengqiang, Wells Lenny, Webber Jenell, Heerema Richard J, Klein Patricia E, Conner Patrick, Wang Xinwang, Grauke L J, Grimwood Jane, Schmutz Jeremy, Randall Jennifer J

Abstract excerpt

Genome-enabled biotechnologies have the potential to accelerate breeding efforts in long-lived perennial crop species. Despite the transformative potential of molecular tools in pecan and other outcrossing tree species, highly heterozygous genomes, significant presence-absence gene content variation, and histories of interspecific hybridization have constrained breeding efforts. To overcome these challenges,...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Chromosomes

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Diploidy

Share to Disease Resistance

Share to Genetic Variation

Share to Genome, Plant

Share to Genomics

Share to Haplotypes

Share to Plant Breeding

Source

Open in PubMed Open full text

Identifiers

PMID: 34226565
DOI: 10.1038/s41467-021-24328-w
PMCID: PMC8257795

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.PMID 34226565Read ↗

Building pan-genome infrastructures for crop plants and their use in association genetics.Semantic proximity Read ↗

Melon pan-genome and multi-parental framework for high-resolution trait dissectionSemantic proximity Read ↗

Pan-genome and multi-parental framework for high-resolution trait dissection in melon (Cucumis melo).Semantic proximity Read ↗

Pangenome Analysis of Pyrus Reveals Potential Role of Transcription Factors in Recent Adaptation to Arid EnvironmentsSemantic proximity Read ↗

Unlocking diversity from wild relatives of perennial fruit crops in the pan-genomics era.Semantic proximity Read ↗

A public mid-density genotyping platform for pecan [Carya illinoinensis (Wangenh.) K. Koch].Semantic proximity Read ↗

Panvariome and pangenome of 1,020 global peach accessions shed light on evolution patterns, hidden natural variations, and efficient gene discovery.Semantic proximity Read ↗

Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome.Semantic proximity Read ↗

Haplotype-resolved T2T genome assemblies and pangenome graph of pear reveal diverse patterns of allele-specific expression and the genomic basis of fruit quality traits.Semantic proximity Read ↗

High-resolution genome and genetic map of tetraploid Allium porrum expose pericentromeric recombination.Semantic proximity Read ↗

Chromosome-scale genome assembly of acerola (Malpighia emarginata DC.).Semantic proximity Read ↗

Design and evaluation of a sequence capture system for genome-wide SNP genotyping in highly heterozygous plant genomes: a case study with a keystone Neotropical hardwood tree genome.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.