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Whole-genome automated assembly pipeline for Chlamydia trachomatis strains from reference, in vitro and clinical samples using the integrated CtGAP pipeline

7 Jan 2025

Abstract excerpt

Abstract Whole genome sequencing (WGS) is pivotal for the molecular characterization of Chlamydia trachomatis (Ct)—the leading bacterial cause of sexually transmitted infections and infectious blindness worldwide. Ct WGS can inform epidemiologic, public health and outbreak investigations of these human-restricted pathogens. However, challenges persist in generating high-quality genomes for downstream analyses...

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PMID: 39781511
DOI: 10.1093/nargab/lqae187

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