Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Sequence-matching adapter trimmers generate consistent quality and assembly metrics for Illumina sequencing of RNA viruses.

BMC research notes - 14 Oct 2024

Nabakooza Grace, Wagner Darlene D, Momin Nehalraza, Marine Rachel L, Weldon William C, Oberste M Steven

Abstract excerpt

Trimming adapters and low-quality bases from next-generation sequencing (NGS) data is crucial for optimal analysis. We evaluated six trimming programs, implementing five different algorithms, for their effectiveness in trimming adapters and improving quality, contig assembly, and single-nucleotide polymorphism (SNP) quality and concordance for poliovirus, severe acute respiratory syndrome coronavirus 2...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Genome, Viral

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Norovirus

Share to Poliovirus

Share to RNA, Viral

Share to RNA Viruses

Share to SARS-CoV-2

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 39402647
DOI: 10.1186/s13104-024-06951-0
PMCID: PMC11476207

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 1 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Sequence-matching adapter trimmers generate consistent quality and assembly metrics for Illumina sequencing of RNA viruses.PMID 39402647Read ↗

Sequence-matching adapter trimmers generate consistent quality and assembly metrics for Illumina sequencing of RNA virusesSemantic proximity Read ↗

Illumina MiSeq and iSeq platforms yield comparable results for viral genomic sequencing.Semantic proximity Read ↗

A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samplesSemantic proximity Read ↗

AdapterRemoval: easy cleaning of next-generation sequencing reads.Semantic proximity Read ↗

Comparative Evaluation of Bioinformatic Pipelines for Full-Length Viral Genome AssemblySemantic proximity Read ↗

Read trimming has minimal effect on bacterial SNP-calling accuracy.Semantic proximity Read ↗

Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-Seq.Semantic proximity Read ↗

AUSPP: A universal short-read pre-processing package.Semantic proximity Read ↗

Enhancing public health surveillance: a comparative study of platform-specific and hybrid assembly approaches in SARS-CoV-2 genome sequencing.Semantic proximity Read ↗

Choice of assembly software has a critical impact on virome characterisationSemantic proximity Read ↗

GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality.Semantic proximity Read ↗

AI-Enabled Pipeline for Virus Detection, Validation, and SNP Discovery from Next-Generation Sequencing DataSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.