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Early identification of a ward-based outbreak of Clostridioides difficile using prospective multilocus sequence type-based Oxford Nanopore genomic surveillance

6 May 2024

Abstract excerpt

OBJECTIVE: infection (CDI) detected by a recently implemented multilocus sequence type (MLST)-based prospective genomic surveillance system using Oxford Nanopore Technologies (ONT) sequencing. SETTING: Hemato-oncology ward of a public tertiary referral centre. METHODS: isolated from inpatients at our institution on the ONT MinION device, with the output being an MLST. Bed-movement data are used to construct...

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PMID: 38706217
DOI: 10.1017/ice.2024.77

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