Article
PanEffect: a pan-genome visualization tool for variant effects in maize.
Bioinformatics (Oxford, England) - 1 Feb 2024
Andorf Carson M, Haley Olivia C, Hayford Rita K, Portwood John L, Harding Stephen, Sen Shatabdi, Cannon Ethalinda K, Gardiner Jack M, Kim Hye-Seon, Woodhouse Margaret R
Abstract excerpt
SUMMARY: Understanding the effects of genetic variants is crucial for accurately predicting traits and functional outcomes. Recent approaches have utilized artificial intelligence and protein language models to score all possible missense variant effects at the proteome level for a single genome, but a reliable tool is needed to explore these effects at the pan-genome level. To address this gap, we introduce a...
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