Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Comparison of next generation technologies and bioinformatics pipelines for capsular typing of Streptococcus pneumoniae

21 Nov 2023

Abstract excerpt

ABSTRACT Whole genome sequencing (WGS)-based approaches for pneumococcal capsular typing have become an alternative to serological methods. In silico serotyping from WGS has not yet been applied to long-read sequences produced by third-generation technologies. The objective of the study was to determine the capsular types of pneumococci causing invasive disease in Catalonia (Spain) using serological typing and...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacterial Infections and Vaccines
Share to Pneumonia and Respiratory Infections
Share to Respiratory viral infections research

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Source

Identifiers

PMID: 38092657
DOI: 10.1128/jcm.00741-23

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 8 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Comparison of next generation technologies and bioinformatics pipelines for capsular typing of Streptococcus pneumoniaePMID 38092657Read ↗

From Quellung to Genomics: Comparative Evaluation of Six WGS-Based Serotyping Tools for Streptococcus pneumoniae Surveillance in High-Burden SettingsSemantic proximity Read ↗

PfaSTer: A ML-powered serotype caller for <i>Streptococcus pneumoniae</i> genomesSemantic proximity Read ↗

Whole-genome sequencing, strain composition, and predicted antimicrobial resistance of Streptococcus pneumoniae causing invasive disease in England in 2017–20: a prospective national surveillance studySemantic proximity Read ↗

Multistate population and whole genome sequence-based strain surveillance of invasive pneumococci recovered in the USA during 2017Semantic proximity Read ↗

Global pneumococcal sequence cluster lineage for invasive pneumococcal isolates in Denmark from summer 2019 to 2023Semantic proximity Read ↗

The Molecular Approaches and Challenges of Streptococcus pneumoniae Serotyping for Epidemiological Surveillance in the Vaccine EraSemantic proximity Read ↗

A genome-based survey of invasive pneumococci in Norway over four decades reveals lineage-specific responses to vaccinationSemantic proximity Read ↗

Comparison of molecular serotyping approaches of Streptococcus agalactiae from genomic sequences.Semantic proximity Read ↗

Determining Streptococcus suis serotype from short-read whole-genome sequencing dataSemantic proximity Read ↗

Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structureSemantic proximity Read ↗

PneumoKITy: A fast, flexible, specific, and sensitive tool for Streptococcus pneumoniae serotype screening and mixed serotype detection from genome sequence dataSemantic proximity Read ↗

Current methods for capsular typing of Streptococcus pneumoniae.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.