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Multistate population and whole genome sequence-based strain surveillance of invasive pneumococci recovered in the USA during 2017

16 Sept 2019

Abstract excerpt

OBJECTIVES: We aimed to provide population-based and whole-genome sequence (WGS) -based characterization of invasive pneumococcal disease isolates collected from multistate surveillance in the USA during 2017. METHODS: We obtained short-read WGS from 2881 isolates with associated bioinformatics pipeline strain feature predictions. For quality control, capsular serotypes and antimicrobial MICs were also obtained...

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PMID: 31536818
DOI: 10.1016/j.cmi.2019.09.008

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