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Determining Streptococcus suis serotype from short-read whole-genome sequencing data

22 Jul 2016

Abstract excerpt

BACKGROUND: Streptococcus suis is divided into 29 serotypes based on a serological reaction against the capsular polysaccharide (CPS). Multiplex PCR tests targeting the cps locus are also used to determine S. suis serotypes, but they cannot differentiate between serotypes 1 and 14, and between serotypes 2 and 1/2. Here, we developed a pipeline permitting in silico serotype determination from whole-genome...

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PMID: 27449127
DOI: 10.1186/s12866-016-0782-8

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