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Article

cgMSI: pathogen detection within species from nanopore metagenomic sequencing data.

BMC bioinformatics - 12 Oct 2023

Zhu Xu, Zhao Lili, Huang Lihong, Yang Wenxian, Wang Liansheng, Yu Rongshan

Abstract excerpt

BACKGROUND: Metagenomic sequencing is an unbiased approach that can potentially detect all the known and unidentified strains in pathogen detection. Recently, nanopore sequencing has been emerging as a highly potential tool for rapid pathogen detection due to its fast turnaround time. However, identifying pathogen within species is nontrivial for nanopore sequencing data due to the high sequencing error rate....

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PMID: 37821827
DOI: 10.1186/s12859-023-05512-9
PMCID: PMC10568937

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