Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Fast all versus all genotype comparison using DNA/RNA sequencing data: method and workflow.

BMC bioinformatics - 24 Apr 2023

Eschrich Steven A, Yu Xiaoqing, Teer Jamie K

Abstract excerpt

BACKGROUND: Massively parallel sequencing includes many liquid handling steps which introduce the possibility of sample swaps, mixing, and duplication. The unique profile of inherited variants in human genomes allows for comparison of sample identity using sequence data. A comparison of all samples vs. each other (all vs. all) provides both identification of mismatched samples and the possibility of resolving...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to DNA
Share to Genotype
Share to High-Throughput Nucleotide Sequencing

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Sequence Analysis, DNA

Share to Sequence Analysis, RNA

Share to Software

Share to Workflow

Source

Open in PubMed Open full text

Identifiers

PMID: 37095442
DOI: 10.1186/s12859-023-05288-y
PMCID: PMC10124007

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 9 closest

Fast all versus all genotype comparison using DNA/RNA sequencing data: method and workflow.PMID 37095442Read ↗

Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls.Semantic proximity Read ↗

NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types.Semantic proximity Read ↗

SGCaller: a program to call and review genotypes measured by sequencing.Semantic proximity Read ↗

ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detectionSemantic proximity Read ↗

Demuxalot: scaled up genetic demultiplexing for single-cell sequencingSemantic proximity Read ↗

Ultra-deep multi-oncopanel sequencing of benchmarking samples with a wide range of variant allele frequencies.Semantic proximity Read ↗

Evaluation of the AllType kit for HLA typing using the Ion Torrent S5 XL platformSemantic proximity Read ↗

Systematic benchmarking of ‘all-in-one’ microbial SNP calling pipelinesSemantic proximity Read ↗

Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.