Evolink: a phylogenetic approach for rapid identification of genotype-phenotype associations in large-scale microbial multispecies data.

Abstract excerpt

MOTIVATION: The discovery of the genetic features that underly a phenotype is a fundamental task in microbial genomics. With the growing number of microbial genomes that are paired with phenotypic data, new challenges, and opportunities are arising for genotype-phenotype inference. Phylogenetic approaches are frequently used to adjust for the population structure of microbes but scaling them to trees with...

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