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Article

DeepPheWAS: an R package for phenotype generation and association analysis for phenome-wide association studies.

Bioinformatics (Oxford, England) - 3 Apr 2023

Packer Richard J, Williams Alex T, Hennah William, Eisenberg Micaela T, Shrine Nick, Fawcett Katherine A, Pearson Willow, Guyatt Anna L, Edris Ahmed, Hollox Edward J, Marttila Mikko, Rao Balasubramanya S, Bratty John Raymond, Wain Louise V, Dudbridge Frank, Tobin Martin D

Abstract excerpt

SUMMARY: DeepPheWAS is an R package for phenome-wide association studies that creates clinically curated composite phenotypes and integrates quantitative phenotypes from primary care data, longitudinal trajectories of quantitative measures, disease progression and drug response phenotypes. Tools are provided for efficient analysis of association with any genetic input, under any genetic model, with optional...

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Identifiers

PMID: 36744935
DOI: 10.1093/bioinformatics/btad073
PMCID: PMC10070035

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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