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Article

MIDAS2: Metagenomic Intra-species Diversity Analysis System.

Bioinformatics (Oxford, England) - 1 Jan 2023

Zhao Chunyu, Dimitrov Boris, Goldman Miriam, Nayfach Stephen, Pollard Katherine S

Abstract excerpt

SUMMARY: The Metagenomic Intra-Species Diversity Analysis System (MIDAS) is a scalable metagenomic pipeline that identifies single nucleotide variants (SNVs) and gene copy number variants in microbial populations. Here, we present MIDAS2, which addresses the computational challenges presented by increasingly large reference genome databases, while adding functionality for building custom databases and leveraging...

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PMID: 36321886
DOI: 10.1093/bioinformatics/btac713
PMCID: PMC9805558

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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