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Article

metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes.

Bioinformatics (Oxford, England) - 27 Jan 2022

Van Rossum Thea, Costea Paul I, Paoli Lucas, Alves Renato, Thielemann Roman, Sunagawa Shinichi, Bork Peer

Abstract excerpt

SUMMARY: Taxonomic analysis of microbial communities is well supported at the level of species and strains. However, species can contain significant phenotypic diversity and strains are rarely widely shared across global populations. Stratifying the diversity between species and strains can identify 'subspecies', which are a useful intermediary. High-throughput identification and profiling of subspecies is not...

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PMID: 34791031
DOI: 10.1093/bioinformatics/btab789
PMCID: PMC8796361

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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