Article
A complete pedigree-based graph workflow for rare candidate variant analysis.
Genome research - 1 May 2022
Markello Charles, Huang Charles, Rodriguez Alex, Carroll Andrew, Chang Pi-Chuan, Eizenga Jordan, Markello Thomas, Haussler David, Paten Benedict
Abstract excerpt
Methods that use a linear genome reference for genome sequencing data analysis are reference-biased. In the field of clinical genetics for rare diseases, a resulting reduction in genotyping accuracy in some regions has likely prevented the resolution of some cases. Pangenome graphs embed population variation into a reference structure. Although pangenome graphs have helped to reduce reference mapping bias,...
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