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Variant analysis of SARS-CoV-2 genomes

24 Feb 2020

Abstract excerpt

OBJECTIVE: To analyse genome variants of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2). METHODS: Between 1 February and 1 May 2020, we downloaded 10 022 SARS CoV-2 genomes from four databases. The genomes were from infected patients in 68 countries. We identified variants by extracting pairwise alignment to the reference genome NC_045512, using the EMBOSS needle. Nucleotide variants in the coding...

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PMID: 32742035
DOI: 10.2471/blt.20.253591

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