Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

TRTools: a toolkit for genome-wide analysis of tandem repeats.

Bioinformatics (Oxford, England) - 5 May 2021

Mousavi Nima, Margoliash Jonathan, Pusarla Neha, Saini Shubham, Yanicky Richard, Gymrek Melissa

Abstract excerpt

SUMMARY: A rich set of tools have recently been developed for performing genome-wide genotyping of tandem repeats (TRs). However, standardized tools for downstream analysis of these results are lacking. To facilitate TR analysis applications, we present TRTools, a Python library and suite of command line tools for filtering, merging and quality control of TR genotype files. TRTools utilizes an internal...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Gene Library
Share to Genotype
Share to Software

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Tandem Repeat Sequences

Source

Open in PubMed Open full text

Identifiers

PMID: 32805020
DOI: 10.1093/bioinformatics/btaa736
PMCID: PMC8097685

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

TRTools: a toolkit for genome-wide analysis of tandem repeats.PMID 32805020Read ↗

Defining a tandem repeat catalog and variation clusters for genome-wide analysesSemantic proximity Read ↗

A practical guide to identifying associations between tandem repeats and complex human traits using consensus genotypes from multiple tools.Semantic proximity Read ↗

Benchmarking of small and large variants across tandem repeatsSemantic proximity Read ↗

Defining a tandem repeat catalog and variation clusters for genome-wide analyses and population databases.Semantic proximity Read ↗

glactools: a command-line toolset for the management of genotype likelihoods and allele counts.Semantic proximity Read ↗

Insights from a genome-wide truth set of tandem repeat variationSemantic proximity Read ↗

Resolving the unsolved: Comprehensive assessment of tandem repeats at scaleSemantic proximity Read ↗

Precise and ultrafast tandem repeat variant detection in massively parallel sequencing readsSemantic proximity Read ↗

snputils: A High-Performance Python Library for Genetic Variation and Population StructureSemantic proximity Read ↗

WebSTR: A Population-wide Database of Short Tandem Repeat Variation in Humans.Semantic proximity Read ↗

A deep population reference panel of tandem repeat variationSemantic proximity Read ↗

A deep population reference panel of tandem repeat variation.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.