Article
imputeqc: an R package for assessing imputation quality of genotypes and optimizing imputation parameters.
BMC bioinformatics - 24 Jul 2020
Khvorykh Gennady V, Khrunin Andrey V
Abstract excerpt
BACKGROUND: The imputation of genotypes increases the power of genome-wide association studies. However, the imputation quality should be assessed in each particular case. Nevertheless, not all imputation softwares control the error of output, e.g., the last release of fastPHASE program (1.4.8) lacks such an option. In this particular software there is also an uncertainty in choosing the model parameters....
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