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StrainHub: a phylogenetic tool to construct pathogen transmission networks

15 Aug 2019

Abstract excerpt

SUMMARY: In exploring the epidemiology of infectious diseases, networks have been used to reconstruct contacts among individuals and/or populations. Summarizing networks using pathogen metadata (e.g. host species and place of isolation) and a phylogenetic tree is a nascent, alternative approach. In this paper, we introduce a tool for reconstructing transmission networks in arbitrary space from phylogenetic...

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PMID: 31418766
DOI: 10.1093/bioinformatics/btz646

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