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Article

MDPbiome: microbiome engineering through prescriptive perturbations

5 Jul 2018

Abstract excerpt

Motivation: Recent microbiome dynamics studies highlight the current inability to predict the effects of external perturbations on complex microbial populations. To do so would be particularly advantageous in fields such as medicine, bioremediation or industrial scenarios. Results: MDPbiome statistically models longitudinal metagenomics samples undergoing perturbations as a Markov Decision Process (MDP). Given a...

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PMID: 30423107
DOI: 10.1093/bioinformatics/bty562

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