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Article

Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses.

Database : the journal of biological databases and curation - 1 Jan 2018

Le Kevin K, Whiteside Matthew D, Hopkins James E, Gannon Victor P J, Laing Chad R

Abstract excerpt

Public health laboratories are currently moving to whole-genome sequence (WGS)-based analyses, and require the rapid prediction of standard reference laboratory methods based solely on genomic data. Currently, these predictive genomics tasks rely on workflows that chain together multiple programs for the requisite analyses. While useful, these systems do not store the analyses in a genome-centric way, meaning the...

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PMID: 30212910
DOI: 10.1093/database/bay086
PMCID: PMC6146121

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