Article
Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus.
American journal of botany - 1 Mar 2018
Kates Heather Rose, Johnson Matthew G, Gardner Elliot M, Zerega Nyree J C, Wickett Norman J
Abstract excerpt
PREMISE OF THE STUDY: Untapped information about allele diversity within populations and individuals (i.e., heterozygosity) could improve phylogenetic resolution and accuracy. Many phylogenetic reconstructions ignore heterozygosity because it is difficult to assemble allele sequences and combine allele data across unlinked loci, and it is unclear how reconstruction methods accommodate variable sequences. We...
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