Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Microhaplotypes provide increased power from short-read DNA sequences for relationship inference.

Molecular ecology resources - 1 Mar 2018

Baetscher Diana S, Clemento Anthony J, Ng Thomas C, Anderson Eric C, Garza John C

Abstract excerpt

The accelerating rate at which DNA sequence data are now generated by high-throughput sequencing instruments provides both opportunities and challenges for population genetic and ecological investigations of animals and plants. We show here how the common practice of calling genotypes from a single SNP per sequenced region ignores substantial additional information in the phased short-read sequences that are...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to Fishes
Share to Genetics, Population

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genotyping Techniques

Share to Haplotypes

Share to Polymorphism, Single Nucleotide

Share to Sequence Analysis, DNA

Source

Identifiers

PMID: 29143457
DOI: 10.1111/1755-0998.12737

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Microhaplotypes provide increased power from short-read DNA sequences for relationship inference.PMID 29143457Read ↗

A free lunch: microhaplotype discovery in an existing amplicon panel improves parentage assignment for the highly polymorphic Pacific oyster.Semantic proximity Read ↗

Evaluating kinship estimation methods for reduced-representation SNP data in non-model speciesSemantic proximity Read ↗

Current sequencing technology makes microhaplotypes a powerful new type of genetic marker for forensics.Semantic proximity Read ↗

Allele frequency-free inference of close familial relationships from genotypes or low depth sequencing dataSemantic proximity Read ↗

A genome-structure adaptive framework for ROH-based inbreeding estimation in Penaeus vannamei.Semantic proximity Read ↗

The population genetics characteristics of a 90 locus panel of microhaplotypes.Semantic proximity Read ↗

SNPSTRs: empirically derived, rapidly typed, autosomal haplotypes for inference of population history and mutational processes.Semantic proximity Read ↗

A comparison of single nucleotide polymorphism and microsatellite markers for analysis of parentage and kinship in a cooperatively breeding bird.Semantic proximity Read ↗

Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage.Semantic proximity Read ↗

Polly: An R package for genotyping microsatellites and detecting highly polymorphic DNA markers from short-read data.Semantic proximity Read ↗

Allele identification in assembled genomic sequence datasets.Semantic proximity Read ↗

Inferring biological kinship in ancient datasets: comparing the response of ancient DNA-specific software packages to low coverage data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.