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Article

A free lunch: microhaplotype discovery in an existing amplicon panel improves parentage assignment for the highly polymorphic Pacific oyster.

G3 (Bethesda, Md.) - 5 Feb 2025

Thompson Neil F, Sutherland Ben J G, Green Timothy J, Delomas Thomas A

Abstract excerpt

Amplicon panels using genotyping by sequencing methods are now common, but have focused on characterizing SNP markers. We investigate how microhaplotype (MH) discovery within a recently developed Pacific oyster (Magallana gigas) amplicon panel could increase the statistical power for relationship assignment. Trios (offspring and two parents) from three populations in a newly established breeding program were...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 39700397
DOI: 10.1093/g3journal/jkae280
PMCID: PMC11797050

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