Investigation of Outbreaks of Salmonella enterica Serovar Typhimurium and Its Monophasic Variants Using Whole-Genome Sequencing, Denmark.

doi:10.3201/eid2310.161248

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Article

Investigation of Outbreaks of Salmonella enterica Serovar Typhimurium and Its Monophasic Variants Using Whole-Genome Sequencing, Denmark.

Emerging infectious diseases - 1 Oct 2017

Gymoese Pernille, Sørensen Gitte, Litrup Eva, Olsen John Elmerdal, Nielsen Eva Møller, Torpdahl Mia

Abstract excerpt

Whole-genome sequencing is rapidly replacing current molecular typing methods for surveillance purposes. Our study evaluates core-genome single-nucleotide polymorphism analysis for outbreak detection and linking of sources of Salmonella enterica serovar Typhimurium and its monophasic variants during a 7-month surveillance period in Denmark. We reanalyzed and defined 8 previously characterized outbreaks from the...

Topics

Animals
Cattle
DNA, Bacterial
Denmark
Disease Outbreaks
Epidemiological Monitoring
Food Microbiology
Humans
Meat
Molecular Epidemiology
Phylogeny

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Polymorphism, Single Nucleotide

Salmonella Infections

Salmonella typhimurium

Serogroup

Swine

Whole Genome Sequencing

Source

Open in PubMed Open full text

Identifiers

PMID: 28930002
DOI: 10.3201/eid2310.161248
PMCID: PMC5621559

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