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Article

Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing.

Journal of clinical microbiology - 1 Aug 2015

Fu Songzhe, Octavia Sophie, Tanaka Mark M, Sintchenko Vitali, Lan Ruiting

Abstract excerpt

Salmonella enterica serovar Typhimurium is the most common Salmonella serovar causing foodborne infections in Australia and many other countries. Twenty-one S. Typhimurium strains from Salmonella reference collection A (SARA) were analyzed using Illumina high-throughput genome sequencing. Single nucleotide polymorphisms (SNPs) in 21 SARA strains ranged from 46 to 11,916 SNPs, with an average of 1,577 SNPs per...

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Identifiers

PMID: 26019201
DOI: 10.1128/JCM.03407-14
PMCID: PMC4508408

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