Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Variant genotyping with gap filling.

PloS one - 1 Jan 2017

Walve Riku, Salmela Leena, Mäkinen Veli

Abstract excerpt

Although recent developments in DNA sequencing have allowed for great leaps in both the quality and quantity of genome assembly projects, de novo assemblies still lack the efficiency and accuracy required for studying genetic variation of individuals. Thus, efficient and accurate methods for calling and genotyping genetic variants are fundamental to studying the genomes of individuals. We study the problem of...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Computational Biology
Share to Genotype

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to High-Throughput Nucleotide Sequencing

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 28886164
DOI: 10.1371/journal.pone.0184608
PMCID: PMC5590988

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 10 closest

Variant genotyping with gap filling.PMID 28886164Read ↗

GINDEL: accurate genotype calling of insertions and deletions from low coverage population sequence reads.Semantic proximity Read ↗

Efficiently detecting polymorphisms during the fragment assembly process.Semantic proximity Read ↗

GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence ReadsSemantic proximity Read ↗

Next generation cluster editingSemantic proximity Read ↗

Fast alignment of reads to a variation graph with application to SNP detection.Semantic proximity Read ↗

Better ILP models for haplotype assembly.Semantic proximity Read ↗

GraphSlimmer: Preserving Read Mappability with the Minimum Number of Variants.Semantic proximity Read ↗

SpeedHap: an accurate heuristic for the single individual SNP haplotyping problem with many gaps, high reading error rate and low coverage.Semantic proximity Read ↗

Parameterised algorithms of the individual haplotyping problem with gaps.Semantic proximity Read ↗

Statistical mutation calling from sequenced overlapping DNA pools in TILLING experiments.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.