Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds.

doi:10.1186/s12864-017-3943-8

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Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds.

BMC genomics - 27 Jul 2017

Schaefer Robert J, Schubert Mikkel, Bailey Ernest, Bannasch Danika L, Barrey Eric, Bar-Gal Gila Kahila, Brem Gottfried, Brooks Samantha A, Distl Ottmar, Fries Ruedi, Finno Carrie J, Gerber Vinzenz, Haase Bianca, Jagannathan Vidhya, Kalbfleisch Ted, Leeb Tosso, Lindgren Gabriella, Lopes Maria Susana, Mach Núria, da Câmara Machado Artur, MacLeod James N, McCoy Annette, Metzger Julia, Penedo Cecilia, Polani Sagi, Rieder Stefan, Tammen Imke, Tetens Jens, Thaller Georg, Verini-Supplizi Andrea, Wade Claire M, Wallner Barbara, Orlando Ludovic, Mickelson James R, McCue Molly E

Abstract excerpt

BACKGROUND: To date, genome-scale analyses in the domestic horse have been limited by suboptimal single nucleotide polymorphism (SNP) density and uneven genomic coverage of the current SNP genotyping arrays. The recent availability of whole genome sequences has created the opportunity to develop a next generation, high-density equine SNP array. RESULTS: Using whole genome sequence from 153 individuals...

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PMID: 28750625
DOI: 10.1186/s12864-017-3943-8
PMCID: PMC5530493

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