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Article

Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.

Journal of clinical microbiology - 1 Aug 2017

Roer Louise, Tchesnokova Veronika, Allesøe Rosa, Muradova Mariya, Chattopadhyay Sujay, Ahrenfeldt Johanne, Thomsen Martin C F, Lund Ole, Hansen Frank, Hammerum Anette M, Sokurenko Evgeni, Hasman Henrik

Abstract excerpt

The aim of this study was to construct a valid publicly available method for in silico fimH subtyping of Escherichia coli particularly suitable for differentiation of fine-resolution subgroups within clonal groups defined by standard multilocus sequence typing (MLST). FimTyper was constructed as a FASTA database containing all currently known fimH alleles. The software source code is publicly available at...

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Identifiers

PMID: 28592545
DOI: 10.1128/JCM.00737-17
PMCID: PMC5527432

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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