Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

CVE: an R package for interactive variant prioritisation in precision oncology.

BMC medical genomics - 25 May 2017

Mock Andreas, Murphy Suzanne, Morris James, Marass Francesco, Rosenfeld Nitzan, Massie Charlie

Abstract excerpt

BACKGROUND: An increasing number of precision oncology programmes are being launched world-wide. To support this development, we present the Cancer Variant Explorer (CVE), an R package with an interactive Shiny web browser interface. RESULTS: Leveraging Oncotator and the Drug Gene Interaction Database, CVE offers exploration of variants within single or multiple tumour exomes to identify drivers, resistance...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Antineoplastic Agents
Share to Databases, Genetic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Drug Resistance, Neoplasm

Share to Gene Expression Regulation, Neoplastic

Share to Genomics

Share to Neoplasms

Share to Precision Medicine

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 28545463
DOI: 10.1186/s12920-017-0261-6
PMCID: PMC5445311

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026. Manifest publication-graph-cohort-2026-09-05.1.

Source receipt: pubmed, retrieved 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

CVE: an R package for interactive variant prioritisation in precision oncology.PMID 28545463Read ↗

The Personalized Cancer Network Explorer (PeCaX) as a visual analytics tool to support molecular tumor boardsSemantic proximity Read ↗

CRAVAT 4: Cancer-Related Analysis of Variants ToolkitSemantic proximity Read ↗

Personalized Cancer Therapy Prioritization Based on Driver Alteration Co-occurrence PatternsSemantic proximity Read ↗

RIPPLET: Mutation-Only Gene and Pathway Profiling for Precision OncologySemantic proximity Read ↗

OncoRisk: a state-of-the-art web server for bridging the oncogenic databases and pan-cancer cohorts to the translational oncology.Semantic proximity Read ↗

Use of an integrated pan-cancer oncology enrichment NGS assay to measure tumour mutational burden and detect clinically actionable variantsSemantic proximity Read ↗

Multi-omic data helps improve prediction of personalised tumor suppressors and oncogenesSemantic proximity Read ↗

OncoRisk: A state-of-the-art Web Server for bridging the oncogenic databases and pan-cancer cohorts to the translational oncologySemantic proximity Read ↗

HitWalker: variant prioritization for personalized functional cancer genomics.Semantic proximity Read ↗

iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomesSemantic proximity Read ↗

Use of an Integrated Pan-Cancer Oncology Enrichment Next-Generation Sequencing Assay to Measure Tumour Mutational Burden and Detect Clinically Actionable Variants.Semantic proximity Read ↗

Genome Nexus: A Comprehensive Resource for the Annotation and Interpretation of Genomic Variants in Cancer.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.