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An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly.

Annals of botany - 1 Jul 2016

Velmurugan Janaki, Mollison Ewan, Barth Susanne, Marshall David, Milne Linda, Creevey Christopher J, Lynch Bridget, Meally Helena, McCabe Matthew, Milbourne Dan

Abstract excerpt

BACKGROUND AND AIMS: High density genetic linkage maps that are extensively anchored to assembled genome sequences of the organism in question are extremely useful in gene discovery. To facilitate this process in perennial ryegrass (Lolium perenne L.), a high density single nucleotide polymorphism (SNP)- and presence/absence variant (PAV)-based genetic linkage map has been developed in an F2 mapping population...

Topics

Chromosome Mapping
Genetic Linkage
Genome, Plant
Genotyping Techniques
High-Throughput Nucleotide Sequencing
Homozygote
Lolium
Polymorphism, Single Nucleotide

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 27268483
DOI: 10.1093/aob/mcw081
PMCID: PMC4934400

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