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De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies.

BMC genomics - 18 Aug 2016

Mousavi Mohaddeseh, Tong Chunfa, Liu Fenxiang, Tao Shentong, Wu Jiyan, Li Huogen, Shi Jisen

Abstract excerpt

BACKGROUND: Restriction site associated DNA sequencing (RAD-seq), a next-generation sequencing technology, has greatly facilitated genetic linkage mapping studies in outbred species. RAD-seq is capable of discovering thousands of genetic markers for linkage mapping across many individuals, and can be applied in species with or without a reference genome. Although several analytical tools are available for RAD-seq...

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PMID: 27538483
DOI: 10.1186/s12864-016-3003-9
PMCID: PMC4991039

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