Article
De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies.
BMC genomics - 18 Aug 2016
Mousavi Mohaddeseh, Tong Chunfa, Liu Fenxiang, Tao Shentong, Wu Jiyan, Li Huogen, Shi Jisen
Abstract excerpt
BACKGROUND: Restriction site associated DNA sequencing (RAD-seq), a next-generation sequencing technology, has greatly facilitated genetic linkage mapping studies in outbred species. RAD-seq is capable of discovering thousands of genetic markers for linkage mapping across many individuals, and can be applied in species with or without a reference genome. Although several analytical tools are available for RAD-seq...
Topics
- Chimera
- Chromosome Mapping
- Chromosomes, Plant
- Genetic Linkage
- Genome, Plant
- Polymorphism, Single Nucleotide
- Populus
- Quantitative Trait Loci
- Restriction Mapping
- Sequence Analysis, DNA