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Article

Lack of Genotype and Phenotype Correlation in a Rice T-DNA Tagged Line Is Likely Caused by Introgression in the Seed Source.

PloS one - 1 Jan 2016

Wei Fu-Jin, Tsai Yuan-Ching, Hsu Yu-Ming, Chen Yu-An, Huang Ching-Ting, Wu Hshin-Ping, Huang Lin-Tzu, Lai Ming-Hsin, Kuang Lin-Yun, Lo Shuen-Fang, Yu Su-May, Lin Yann-Rong, Hsing Yue-Ie Caroline

Abstract excerpt

Rice (Oryza sativa) is one of the most important crops in the world. Several rice insertional mutant libraries are publicly available for systematic analysis of gene functions. However, the tagging efficiency of these mutant resources-the relationship between genotype and phenotype-is very low. We used whole-genome sequencing to analyze a T-DNA-tagged transformant from the Taiwan Rice Insertional Mutants (TRIM)...

Topics

DNA, Bacterial
DNA, Plant
Gene Transfer, Horizontal
Genome, Plant
Genotype
Mutation
Oryza
Phenotype
Polymorphism, Single Nucleotide
Recombination, Genetic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Seeds

Sequence Analysis, DNA

Source

Open in PubMed Open full text

Identifiers

PMID: 27186981
DOI: 10.1371/journal.pone.0155768
PMCID: PMC4871347

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 29 Aug 2026. Prepared record publication-27186981-2026-08-29.1. Manifest publication-graph-cohort-2026-08-29.1.

Source receipt: PubMed via Helena Literature Corpus, retrieved 29 Aug 2026.

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