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Article

Linkage Disequilibrium and Inversion-Typing of the Drosophila melanogaster Genome Reference Panel.

G3 (Bethesda, Md.) - 10 Jun 2015

Houle David, Márquez Eladio J

Abstract excerpt

We calculated the linkage disequilibrium between all pairs of variants in the Drosophila Genome Reference Panel with minor allele count ≥5. We used r(2) ≥ 0.5 as the cutoff for a highly correlated SNP. We make available the list of all highly correlated SNPs for use in association studies. Seventy-six percent of variant SNPs are highly correlated with at least one other SNP, and the mean number of highly...

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PMID: 26068573
DOI: 10.1534/g3.115.019554
PMCID: PMC4528326

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