Article
Rapid genotyping of targeted viral samples using Illumina short-read sequencing data.
PloS one - 1 Jan 2022
Váradi Alex, Kaszab Eszter, Kardos Gábor, Prépost Eszter, Szarka Krisztina, Laczkó Levente
Abstract excerpt
The most important information about microorganisms might be their accurate genome sequence. Using current Next Generation Sequencing methods, sequencing data can be generated at an unprecedented pace. However, we still lack tools for the automated and accurate reference-based genotyping of viral sequencing reads. This paper presents our pipeline designed to reconstruct the dominant consensus genome of viral...
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