Article
Effect of reference population size and available ancestor genotypes on imputation of Mexican Holstein genotypes.
Journal of dairy science - 1 May 2015
García-Ruiz A, Ruiz-Lopez F J, Wiggans G R, Van Tassell C P, Montaldo H H
Abstract excerpt
The effects of reference population size and the availability of information from genotyped ancestors on the accuracy of imputation of single nucleotide polymorphisms (SNP) were investigated for Mexican Holstein cattle. Three scenarios for reference population size were examined: (1) a local population of 2,011 genotyped Mexican Holsteins, (2) animals in scenario 1 plus 866 Holsteins in the US genotype database...
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