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Article

Imputation accuracy from low- to medium-density SNP chips for US crossbred dairy cattle.

Journal of dairy science - 1 Jan 2024

Déru Vanille, Tiezzi Francesco, VanRaden Paul M, Lozada-Soto Emmanuel A, Toghiani Sajjad, Maltecca Christian

Abstract excerpt

This study aimed at evaluating the quality of imputation accuracy (IA) by marker (IAm) and by individual (IAi) in US crossbred dairy cattle. Holstein × Jersey crossbreds were used to evaluate IA from a low- (7K) to a medium-density (50K) SNP chip. Crossbred animals, as well as their sires (53), dams (77), and maternal grandsires (63), were all genotyped with a 78K SNP chip. Seven different scenarios of reference...

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PMID: 37641298
DOI: 10.3168/jds.2023-23250

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